Computational Simulation

Molecular Dynamics

RDF, MSD, diffusion, free energy, interface wetting, solution/polymer/electrical structure simulation.

PROJECTS

Molecular Dynamics Project

Custom Molecular Dynamics — Reference Image
Molecular Dynamics

Custom Molecular Dynamics

Molecular dynamics customization: trajectory or statistical data, results curve/construct and description of methods

Radial Distribution Function (RDF) — Reference Image
Molecular Dynamics

Radial Distribution Function (RDF)

Path distribution function (RDF): description of tracks or statistics, outcome curves/constructs and methods

Mean Square Displacement (MSD) — Reference Image
Molecular Dynamics

Mean Square Displacement (MSD)

Mean Square Displacement (MSD): description of tracks or statistics, outcome curves/constructs and methods

Diffusion Coefficient — Reference Image
Molecular Dynamics

Diffusion Coefficient

Diffusion factor: trajectory or statistical data, results curve/construct and description of methods

Velocity Autocorrelation Function (VACF) — Reference Image
Molecular Dynamics

Velocity Autocorrelation Function (VACF)

Speed associated with (VACF): trajectory or statistical data, results curve/construct and description of methods

Hydrogen Bond Analysis — Reference Image
Molecular Dynamics

Hydrogen Bond Analysis

Hydrogen Bond Analysis: trajectories or statistics, outcome curves/constructors and description of methods

Density Distribution — Reference Image
Molecular Dynamics

Density Distribution

Density Distribution: trajectory or statistical data, results curve/construct and description of methods

RMSD — Reference Image
Molecular Dynamics

RMSD

RMSD: Track or statistical data, results curve/construct and description of methods

RMSF — Reference Image
Molecular Dynamics

RMSF

RMSF: trajectory or statistical data, results curve/construct and description of methods

Solvent-Accessible Surface Area (SASA) — Reference Image
Molecular Dynamics

Solvent-Accessible Surface Area (SASA)

Solvents can reach surface area (SASA): tracks or statistics, results curves/constructions, and description of methods

Radius of Gyration (Rg) — Reference Image
Molecular Dynamics

Radius of Gyration (Rg)

Radius of Gyration (Rg): description of trajectory or statistical data, outcome curves/constructs and methods

Dihedral Angle Distribution — Reference Image
Molecular Dynamics

Dihedral Angle Distribution

Dihedral Angle Distribution: trajectory or statistical data, outcome curve/construct and description of methods

Conformational Clustering — Reference Image
Molecular Dynamics

Conformational Clustering

Portrait cluster analysis: trajectory or statistical data, outcome curve/construct and methodological description

Free Energy Surface (FES) — Reference Image
Molecular Dynamics

Free Energy Surface (FES)

Free energy face (FES): description of trajectories or statistics, outcome curves/constructors and methods

Umbrella Sampling — Reference Image
Molecular Dynamics

Umbrella Sampling

Umbrella sample: trajectory or statistical data, outcome curve/construct and methodological description

Thermodynamic Integration (TI) — Reference Image
Molecular Dynamics

Thermodynamic Integration (TI)

Thermodynamic fraction (TI): trajectory or statistical data, results curve/construct and description of methods

Ensemble Averaging (IM) — Reference Image
Molecular Dynamics

Ensemble Averaging (IM)

Ensemble Averaging (IM): trajectory or statistical data, outcome curve/construct and description of methods

Nonequilibrium Molecular Dynamics (NEMD) — Reference Image
Molecular Dynamics

Nonequilibrium Molecular Dynamics (NEMD)

Non-balanced MD(NEMD): description of trajectory or statistical data, outcome curve/construct and methodology

Viscosity Calculation — Reference Image
Molecular Dynamics

Viscosity Calculation

Computation of viscosity: tracks or statistics, result curves/constructs and description of methods

Thermal Conductivity Calculation — Reference Image
Molecular Dynamics

Thermal Conductivity Calculation

Thermal Conductivity Calculation: trajectory or statistical data, outcome curve/construct and description of methods

Ionic Conductivity — Reference Image
Molecular Dynamics

Ionic Conductivity

Ionic Conductivity: trajectory or statistical data, outcome curve/construct and description of methods

Battery Electrolyte Analysis — Reference Image
Molecular Dynamics

Battery Electrolyte Analysis

Battery Electrolyte Analysis: trajectory or statistical data, outcome curve/construct and description of methods

Polymer Chain Conformation — Reference Image
Molecular Dynamics

Polymer Chain Conformation

Polymer Chain Conformation image: a trajectory or statistical data, results curve/construct and description of methods

Adsorption and Diffusion Mechanisms — Reference Image
Molecular Dynamics

Adsorption and Diffusion Mechanisms

Sorbing diffusion mechanisms: tracks or statistics, outcome curves/constructs and methodological descriptions

Solvation and Solution Structure Simulation — Reference Image
Molecular Dynamics

Solvation and Solution Structure Simulation

Solvation and Solution Structure Simulation: tracks or statistics, outcome curves/constructions and description of methods

Interfacial Interaction Simulation — Reference Image
Molecular Dynamics

Interfacial Interaction Simulation

Interface interactions simulation: tracks or statistics, outcome curves/constructs and description of methods

Surface Wettability and Contact Angle Simulation — Reference Image
Molecular Dynamics

Surface Wettability and Contact Angle Simulation

Surface wetting and contact angle simulation: trajectory or statistical data, outcome curve/construct and description of methods

Adsorption and Separation in Porous Materials — Reference Image
Molecular Dynamics

Adsorption and Separation in Porous Materials

Simulation of separation performance for polypolymers: trajectory or statistical data, results curve/construct and description of methods

Molecular Dynamics and Interfacial Behavior — Reference Image
Molecular Dynamics

Molecular Dynamics and Interfacial Behavior

Molecular Dynamics and Interfacial Behavior: Tracks or Statistics, Result Curve/Construction and Methodological Description